2026

R. Smeriglio, S. Moreno-Grau, D. Mas-Montserrat, C. Thomassin, G. Ventakaraman, M. A. Rivas, A. Savino, J. Abante, S. Di Carlo, A. G. Ioannidis. Large-scale admixture mapping unravels new genetic insights into human disease. (2025). In review (Nat Comms).

2025

Ros et al. (2025). Integration of Calcium Imaging Traces via Deep Generative Modeling. arXiv:2501.14615, URL.

C. Fuses, G. Zavou, B. Ros, J. M. Canals, and J. Abante. Context-Dependent Genetic Modifiers of Huntington’s Disease Revealed through Multimodal Machine Learning. Proceedings of Machine Learning in Computational Biology (MLCB) 2025. PMLR 311:. URL

F. J. Molina-Ruiz, P. Sanders, C. Gomis, J. Abante, F. Londoño, G. Bombau, M. Galofre, G. Vinyes, V. Monforte, and J. M. Canals. CD200-based cell sorting results in homogeneous transplantable striatal neuroblasts for cell therapy. Neurobiology of Disease (2025), 106905. URL

M. Usman, O. Varea, P.I. Radeva, J.M. Canals, J. Abante, D. Ortiz. Explainable AI model reveals disease-related mechanisms in single-cell RNA-seq data. ArXiv (2025), 2501.03923v1, URL.

2024

R. Smeriglio, J. Rosell-Mirmi, P. Radeva, and J. Abante. Leveraging protein-protein interactions in phenotype prediction through graph neural networks. 2024 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 1–8 (2024). URL

Y.R. Shen, S. Zaballa, X. Bech, A. Sancho-Balsells, I. Rodríguez-Navarro, C. Cifuentes-Díaz, G. Seyit-Bremer, S. H. Chun, T. Straub, J. Abante, I. Merino-Valverde, L. Richart, V. Gupta, H.-Y. Li, I. Ballasch, N. Alcázar, J. Alberch, J. M. Canals, M. Abad, and D. del Toro. Expansion of the neocortex and protection from neurodegeneration by in vivo transient reprogramming. Cell Stem Cell (2024). URL

2023

A. Meléndez, C. López, D. Bonet, G. Sant, D. M. Montserrat, J. Abante, M. Rivas, F. Marqués, and A. G. Ioannidis. Assessing Tree-Based Phenotype Prediction on the UK Biobank. 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 3804–3810 (2023).

J. Abante, P. L. Wang, J. Salzman. DIVE: a reference-free statistical approach to diversity-generating and mobile genetic element discovery. Genome Biol 24, 240 (2023). URL

Y. Fang, Z. Jin (†), W. Zhou (†), J. Abante (†), M.A. Koldobskiy, H. Ji, and A.P. Feinberg. DNA methylation entropy is associated with DNA sequence features and developmental epigenetic divergence. Nucleic Acids Research (2023), gkad050. † Equal contribution. URL